E-Commerce Financial Systems That Don't Break When You Scale Across Channels

We work with Amazon FBA sellers, Shopify brands and multi-channel DTC companies that have outgrown basic bookkeeping. Once you sell on more than one platform, ship from third-party warehouses and cross economic nexus thresholds in new states, the numbers in your bank account stop matching the numbers in Seller Central, and nobody can say with confidence which products actually make money.

NexusWorks rebuilds the financial layer underneath your store: settlement-level reconciliation, inventory and COGS that tie back to real unit sales, sales tax registrations that match where you actually have nexus, and CFO-level margin reporting by SKU and channel. Our CPA team is based in Torrance, California and supports e-commerce brands across the South Bay, greater Los Angeles and the rest of the country.

Selling from a specific state? See our e-commerce CPA guides for California, Texas, Florida, New York, Washington and Tennessee.

Bookkeeping tracks transactions, not true profitability

Payouts arrive net of referral fees, FBA fees, ad spend, refunds and reserves, so gross sales and deposits rarely line up with true profit.

Sales tax exposure increases across multiple states

Inventory stored in fulfillment centers and rising sales volume can create nexus in states where you have not registered or filed.

Margins become unclear across channels

Without channel-level P&Ls, a best-selling SKU on Amazon can quietly lose money once fees, returns and storage are allocated.

Based in Torrance, CA, we support e-commerce brands in California, Texas, Florida, New York and nationwide.

E-commerce accounting dashboard for Shopify, Amazon and Walmart sellers
Stressed business owner reviewing unclear finances

CORE PROBLEM

Most e-commerce businesses don’t have a sales problem, they have a financial visibility failure caused by disconnected systems and poor multi-channel reconciliation.
As you scale, you lose clarity on:

The bigger you grow, the less accurate your financial picture becomes.

WHY THE SYSTEM BREAKS

Margins erode because the tools that run your store were never designed to work together:

Without proper eCommerce CFO advisory, this creates hidden margin leakage and incorrect scaling decisions.

NexusWorks accountant helping a client with bookkeeping

HOW NEXUS FIXES IT

We rebuild your financial structure into one coordinated system with a strong focus on eCommerce tax compliance and long-term financial clarity:

Sales Tax Nexus management across 20–45 states

We map economic and physical nexus, register where required, and separate marketplace-facilitator sales from the direct sales you must collect on yourself.

Inventory + COGS alignment tied to real sales data

Purchase cost, duties and inbound freight to fulfillment centers are built into unit cost, with FIFO or weighted-average methods applied consistently.

Product and channel-level margin visibility

Monthly contribution margin by SKU and by channel, after fees, returns, advertising and storage, not just top-line revenue.

CFO-level forecasting for scaling decisions

Cash flow and inventory purchasing forecasts that show how much stock you can fund before Q4 without straining working capital.

QuickBooks Online Cleanup & Migration

NexusWorks

Outcome
True profit visibility per product and channel
Controlled multi-state tax exposure
Elimination of financial blind spots at scale
Accurate scaling decisions based on real margins

Core Services
You Can Trust

Tax Preparation

Federal and state returns prepared with e-commerce specifics in mind and an e-commerce tax strategy behind them: correct treatment of marketplace fees, inventory write-downs, shipping costs and platform 1099-K reporting, so taxable income reflects what your store actually earned.
Real-time financial dashboard on a computer screen
Accountant reviewing financial reports on a laptop

Accounts Reconciliation

We reconcile Amazon settlement reports and Shopify, PayPal and Stripe payouts line by line against bank deposits, separating fees, refunds, reimbursements and reserves so every sale is accounted for.

Financial Reporting

Channel and SKU-level P&Ls, inventory valuation reports and cash conversion metrics delivered monthly, giving you the numbers you need to decide what to reorder, reprice or discontinue.
QuickBooks Online Cleanup & Migration
CPA discussing financial statements with a business client

Tax Planning & Compliance Support

Ongoing sales tax nexus monitoring, state registrations and filings, plus year-round income tax planning on entity structure, inventory methods and equipment or software purchases.
Ready to Simplify Your Finances?

Talk to a bookkeeping specialist today.