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Tax Compliance & IRSCase study 03

Multi-State Nexus Review and S Corporation Returns for a $3M E-Commerce Supplement Brand

Quick answer

NexusWorks reviewed 2025 sales by ship-to state, Amazon FBA warehouse locations and the 1099-K for a $3.2 million supplement brand. We ranked each state by real income tax and sales tax exposure, prepared the S corporation and owner returns, and quoted the research credit as a separate line.

At a glance

Client
E-commerce supplement brand plus a small consulting S corporation
Revenue
About $3.2 million US gross sales in 2025 (Amazon, wholesale, website, other marketplaces)
Footprint
Amazon shipped from fulfillment centers in 41 states; third-party warehouse in one state; employees in two states
Returns
Two Forms 1120-S, owner Forms 1040, state returns, Form 6765
Service
Annual fixed-fee tax engagement with quarterly checkpoints

01

The challenge

The brand filed only where it had employees. Amazon was storing inventory in dozens of states, wholesale partners shipped from their own warehouses, and the founder refused to file "everywhere" on a technicality. He wanted a clear view of which states carried real risk, what filing would cost and roughly what tax was at stake.

02

Our approach

  1. Tied the data first. Sales by ship-to state, the Amazon FBA ship-from report and the Form 1099-K were reconciled to the books within 0.5%.
  2. Separated two nexus tests. Sales tax economic nexus under Wayfair (largely handled by marketplace facilitators) was analyzed separately from income tax nexus, where P.L. 86-272 and inventory presence decide the answer.
  3. Ranked states by real exposure. Each state got an estimate of tax, filing cost and penalty risk, so the founder could decide state by state.
  4. Credit and law change. We scoped the research credit (Form 6765) and the 2025 restoration of immediate expensing for domestic research costs under new Section 174A as a separate quote.
  5. Year-round cadence. Safe harbor estimates in the fall and quarterly checkpoints were built into the fixed fee.

03

Results delivered

  • A state-by-state exposure matrix the founder used to decide where to register and file.
  • Federal and state S corporation returns and owner returns under one fixed annual fee.
  • Research credit opportunity documented with its own scope and fee.
  • A clean data pipeline with the client's outsourced bookkeeper for future years.

04

Frequently asked questions

In many states, yes. Inventory held in a state can create physical presence for income tax and sales tax, even when Amazon collects sales tax as the marketplace facilitator.

Related services

Key terms See the glossary →

Form 1120-Scomposite and nonresident withholdingeconomic nexus (South Dakota v. Wayfair)P.L. 86-272FBA inventory nexusmarketplace facilitatorForm 1099-KForm 6765Section 174Asafe harbor estimates
Reviewed by a California-licensed CPANexusWorks LLC · Last updated Oct 17, 2026

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